Package: mppR
Type: Package
Version: 1.5.0
Date: 2024-02-22
Title: Multi-Parent Population QTL Analysis
Authors@R: c(person("Vincent", "Garin", role = c("aut", "cre"),
             email = "vincent.garin6@gmail.com",
             comment = c(ORCID = "0000-0002-5571-1841")),
             person("Valentin", "Wimmer", role = c("aut")),
             person("Dietrich", "Borchardt", role = c("ctb", "dtc")),
             person("Fred", "van Eeuwijk", role = c("ctb", "ths")),
             person("Marcos", "Malosetti", role = c("ctb", "ths")))
Description: Analysis of experimental multi-parent populations to
        detect regions of the genome (called quantitative trait loci,
        QTLs) influencing phenotypic traits measured in unique and
        multiple environments. The population must be composed of
        crosses between a set of at least three parents (e.g. factorial
        design, 'diallel', or nested association mapping). The
        functions cover data processing, QTL detection, and results
        visualization. The implemented methodology is described in
        Garin, Wimmer, Mezmouk, Malosetti and van Eeuwijk (2017)
        <doi:10.1007/s00122-017-2923-3>, in Garin, Malosetti and van
        Eeuwijk (2020) <doi: 10.1007/s00122-020-03621-0>, and in Garin,
        Diallo, Tekete, Thera, ..., and Rami (2024) <doi:
        10.1093/genetics/iyae003>.
License: GPL-3
Imports: dplyr, ggplot2, graphics, grDevices, igraph, Matrix, methods,
        nlme, parallel, qtl, stats, utils
Depends: R(>= 3.1.0)
Suggests: knitr, rmarkdown, testthat
RoxygenNote: 7.2.3
Encoding: UTF-8
URL: https://github.com/vincentgarin/mppR
BugReports: https://github.com/vincentgarin/mppR/issues
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://vincentgarin.r-universe.dev
Date/Publication: 2024-03-11 09:46:38 UTC
RemoteUrl: https://github.com/vincentgarin/mppr
RemoteRef: HEAD
RemoteSha: 02e46725613bba39744f877acef672c2fc1ea7db
NeedsCompilation: no
Packaged: 2026-07-16 04:45:54 UTC; root
Author: Vincent Garin [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5571-1841>),
  Valentin Wimmer [aut],
  Dietrich Borchardt [ctb, dtc],
  Fred van Eeuwijk [ctb, ths],
  Marcos Malosetti [ctb, ths]
Maintainer: Vincent Garin <vincent.garin6@gmail.com>